T1IKT3_STRMM protein (Strigamia maritima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1IKT3_STRMM

MBD domain-containing protein. (275 aa)

Predicted Functional Partners:

T1ISI1_STRMM

0.855

T1J0D9_STRMM

0.572

T1IXW4_STRMM

0.514

T1INJ3_STRMM

0.505

T1IQ75_STRMM

0.498

T1JFL0_STRMM

0.491

T1IXQ6_STRMM

0.488

T1IJW3_STRMM

0.469

T1J2A0_STRMM

0.451

T1IW71_STRMM

0.437

Your Current Organism:

Strigamia maritima

NCBI taxonomy Id: 126957
Other names: S. maritima

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1IJW3_STRMM	T1IKT3_STRMM	T1IJW3	T1IKT3	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	MBD domain-containing protein.	0.469
T1IJW3_STRMM	T1INJ3_STRMM	T1IJW3	T1INJ3	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	WSC domain-containing protein.	0.857
T1IJW3_STRMM	T1IQ75_STRMM	T1IJW3	T1IQ75	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Uncharacterized protein.	0.926
T1IJW3_STRMM	T1ISI1_STRMM	T1IJW3	T1ISI1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Uncharacterized protein.	0.999
T1IJW3_STRMM	T1IW71_STRMM	T1IJW3	T1IW71	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Uncharacterized protein.	0.625
T1IJW3_STRMM	T1J0D9_STRMM	T1IJW3	T1J0D9	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Uncharacterized protein.	0.434
T1IKT3_STRMM	T1IJW3_STRMM	T1IKT3	T1IJW3	MBD domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.469
T1IKT3_STRMM	T1INJ3_STRMM	T1IKT3	T1INJ3	MBD domain-containing protein.	WSC domain-containing protein.	0.505
T1IKT3_STRMM	T1IQ75_STRMM	T1IKT3	T1IQ75	MBD domain-containing protein.	Uncharacterized protein.	0.498
T1IKT3_STRMM	T1ISI1_STRMM	T1IKT3	T1ISI1	MBD domain-containing protein.	Uncharacterized protein.	0.855
T1IKT3_STRMM	T1IW71_STRMM	T1IKT3	T1IW71	MBD domain-containing protein.	Uncharacterized protein.	0.437
T1IKT3_STRMM	T1IXQ6_STRMM	T1IKT3	T1IXQ6	MBD domain-containing protein.	CRC domain-containing protein.	0.488
T1IKT3_STRMM	T1IXW4_STRMM	T1IKT3	T1IXW4	MBD domain-containing protein.	DIRP domain-containing protein.	0.514
T1IKT3_STRMM	T1J0D9_STRMM	T1IKT3	T1J0D9	MBD domain-containing protein.	Uncharacterized protein.	0.572
T1IKT3_STRMM	T1J2A0_STRMM	T1IKT3	T1J2A0	MBD domain-containing protein.	Uncharacterized protein.	0.451
T1IKT3_STRMM	T1JFL0_STRMM	T1IKT3	T1JFL0	MBD domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.491
T1INJ3_STRMM	T1IJW3_STRMM	T1INJ3	T1IJW3	WSC domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.857
T1INJ3_STRMM	T1IKT3_STRMM	T1INJ3	T1IKT3	WSC domain-containing protein.	MBD domain-containing protein.	0.505
T1INJ3_STRMM	T1IQ75_STRMM	T1INJ3	T1IQ75	WSC domain-containing protein.	Uncharacterized protein.	0.767
T1INJ3_STRMM	T1ISI1_STRMM	T1INJ3	T1ISI1	WSC domain-containing protein.	Uncharacterized protein.	0.999