T1IRT1_STRMM protein (Strigamia maritima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1IRT1_STRMM

Ribosomal_L18e/L15P domain-containing protein. (293 aa)

Predicted Functional Partners:

T1JIV3_STRMM

0.999

T1JJD7_STRMM

0.998

T1JK77_STRMM

0.997

T1IQR4_STRMM

0.996

T1IJ45_STRMM

0.994

T1IR02_STRMM

0.994

T1IR30_STRMM

0.994

T1ITR9_STRMM

0.994

T1IV68_STRMM

0.994

T1IZI1_STRMM

0.994

Your Current Organism:

Strigamia maritima

NCBI taxonomy Id: 126957
Other names: S. maritima

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1IJ45_STRMM	T1IQR4_STRMM	T1IJ45	T1IQR4	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.994
T1IJ45_STRMM	T1IR02_STRMM	T1IJ45	T1IR02	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal_L18_c domain-containing protein.	0.999
T1IJ45_STRMM	T1IR30_STRMM	T1IJ45	T1IR30	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.999
T1IJ45_STRMM	T1IRT1_STRMM	T1IJ45	T1IRT1	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal_L18e/L15P domain-containing protein.	0.994
T1IJ45_STRMM	T1ITR9_STRMM	T1IJ45	T1ITR9	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.999
T1IJ45_STRMM	T1IV68_STRMM	T1IJ45	T1IV68	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
T1IJ45_STRMM	T1IZI1_STRMM	T1IJ45	T1IZI1	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	RIBOSOMAL_L9 domain-containing protein.	0.999
T1IJ45_STRMM	T1JIV3_STRMM	T1IJ45	T1JIV3	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
T1IJ45_STRMM	T1JJD7_STRMM	T1IJ45	T1JJD7	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.999
T1IJ45_STRMM	T1JK77_STRMM	T1IJ45	T1JK77	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
T1IQR4_STRMM	T1IJ45_STRMM	T1IQR4	T1IJ45	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.994
T1IQR4_STRMM	T1IR02_STRMM	T1IQR4	T1IR02	Uncharacterized protein.	Ribosomal_L18_c domain-containing protein.	0.994
T1IQR4_STRMM	T1IR30_STRMM	T1IQR4	T1IR30	Uncharacterized protein.	Uncharacterized protein.	0.994
T1IQR4_STRMM	T1IRT1_STRMM	T1IQR4	T1IRT1	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.996
T1IQR4_STRMM	T1ITR9_STRMM	T1IQR4	T1ITR9	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.994
T1IQR4_STRMM	T1IV68_STRMM	T1IQR4	T1IV68	Uncharacterized protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.989
T1IQR4_STRMM	T1IZI1_STRMM	T1IQR4	T1IZI1	Uncharacterized protein.	RIBOSOMAL_L9 domain-containing protein.	0.999
T1IQR4_STRMM	T1JIV3_STRMM	T1IQR4	T1JIV3	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
T1IQR4_STRMM	T1JJD7_STRMM	T1IQR4	T1JJD7	Uncharacterized protein.	Uncharacterized protein.	0.999
T1IQR4_STRMM	T1JK77_STRMM	T1IQR4	T1JK77	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999