T1ISR6_STRMM protein (Strigamia maritima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1ISR6_STRMM

Uncharacterized protein. (229 aa)

Predicted Functional Partners:

T1JLF9_STRMM

0.996

T1J5U4_STRMM

0.995

T1IPC0_STRMM

0.993

T1JEU9_STRMM

0.990

T1IVC2_STRMM

0.987

T1J5C4_STRMM

0.980

T1IPE8_STRMM

0.979

T1JH05_STRMM

0.969

T1JGR4_STRMM

0.924

T1JLP0_STRMM

0.924

Your Current Organism:

Strigamia maritima

NCBI taxonomy Id: 126957
Other names: S. maritima

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1IPC0_STRMM	T1IPE8_STRMM	T1IPC0	T1IPE8	Uncharacterized protein.	Uncharacterized protein.	0.994
T1IPC0_STRMM	T1ISR6_STRMM	T1IPC0	T1ISR6	Uncharacterized protein.	Uncharacterized protein.	0.993
T1IPC0_STRMM	T1IVC2_STRMM	T1IPC0	T1IVC2	Uncharacterized protein.	Uncharacterized protein.	0.999
T1IPC0_STRMM	T1J5C4_STRMM	T1IPC0	T1J5C4	Uncharacterized protein.	MPN domain-containing protein.	0.996
T1IPC0_STRMM	T1J5U4_STRMM	T1IPC0	T1J5U4	Uncharacterized protein.	Uncharacterized protein.	0.999
T1IPC0_STRMM	T1JEU9_STRMM	T1IPC0	T1JEU9	Uncharacterized protein.	Uncharacterized protein.	0.999
T1IPC0_STRMM	T1JGR4_STRMM	T1IPC0	T1JGR4	Uncharacterized protein.	PSP domain-containing protein.	0.929
T1IPC0_STRMM	T1JH05_STRMM	T1IPC0	T1JH05	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.995
T1IPC0_STRMM	T1JLF9_STRMM	T1IPC0	T1JLF9	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.999
T1IPC0_STRMM	T1JLP0_STRMM	T1IPC0	T1JLP0	Uncharacterized protein.	PSP domain-containing protein.	0.929
T1IPE8_STRMM	T1IPC0_STRMM	T1IPE8	T1IPC0	Uncharacterized protein.	Uncharacterized protein.	0.994
T1IPE8_STRMM	T1ISR6_STRMM	T1IPE8	T1ISR6	Uncharacterized protein.	Uncharacterized protein.	0.979
T1IPE8_STRMM	T1IVC2_STRMM	T1IPE8	T1IVC2	Uncharacterized protein.	Uncharacterized protein.	0.999
T1IPE8_STRMM	T1J5C4_STRMM	T1IPE8	T1J5C4	Uncharacterized protein.	MPN domain-containing protein.	0.995
T1IPE8_STRMM	T1J5U4_STRMM	T1IPE8	T1J5U4	Uncharacterized protein.	Uncharacterized protein.	0.999
T1IPE8_STRMM	T1JEU9_STRMM	T1IPE8	T1JEU9	Uncharacterized protein.	Uncharacterized protein.	0.999
T1IPE8_STRMM	T1JGR4_STRMM	T1IPE8	T1JGR4	Uncharacterized protein.	PSP domain-containing protein.	0.854
T1IPE8_STRMM	T1JH05_STRMM	T1IPE8	T1JH05	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.999
T1IPE8_STRMM	T1JLF9_STRMM	T1IPE8	T1JLF9	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.998
T1IPE8_STRMM	T1JLP0_STRMM	T1IPE8	T1JLP0	Uncharacterized protein.	PSP domain-containing protein.	0.854