T1IVD0_STRMM protein (Strigamia maritima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1IVD0_STRMM

Uncharacterized protein; Belongs to the adaptor complexes medium subunit family. (606 aa)

Predicted Functional Partners:

T1IY47_STRMM

0.999

T1IYZ2_STRMM

0.999

T1IZY9_STRMM

0.999

T1JMU4_STRMM

0.999

T1J7Q7_STRMM

0.992

T1JKH1_STRMM

0.987

T1JLE5_STRMM

0.985

T1JMF6_STRMM

0.977

T1J3E7_STRMM

0.972

T1IH15_STRMM

0.964

Your Current Organism:

Strigamia maritima

NCBI taxonomy Id: 126957
Other names: S. maritima

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1IH15_STRMM	T1IVD0_STRMM	T1IH15	T1IVD0	Uncharacterized protein.	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	0.964
T1IH15_STRMM	T1IY47_STRMM	T1IH15	T1IY47	Uncharacterized protein.	Uncharacterized protein.	0.998
T1IH15_STRMM	T1IYZ2_STRMM	T1IH15	T1IYZ2	Uncharacterized protein.	Adaptin_N domain-containing protein.	0.966
T1IH15_STRMM	T1IZY9_STRMM	T1IH15	T1IZY9	Uncharacterized protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.990
T1IH15_STRMM	T1J3E7_STRMM	T1IH15	T1J3E7	Uncharacterized protein.	Adaptin_N domain-containing protein.	0.802
T1IH15_STRMM	T1JKH1_STRMM	T1IH15	T1JKH1	Uncharacterized protein.	DUF1681 domain-containing protein.	0.901
T1IH15_STRMM	T1JLE5_STRMM	T1IH15	T1JLE5	Uncharacterized protein.	Uncharacterized protein.	0.997
T1IH15_STRMM	T1JMF6_STRMM	T1IH15	T1JMF6	Uncharacterized protein.	AP-1 complex subunit gamma.	0.804
T1IH15_STRMM	T1JMU4_STRMM	T1IH15	T1JMU4	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.962
T1IVD0_STRMM	T1IH15_STRMM	T1IVD0	T1IH15	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.964
T1IVD0_STRMM	T1IY47_STRMM	T1IVD0	T1IY47	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.999
T1IVD0_STRMM	T1IYZ2_STRMM	T1IVD0	T1IYZ2	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Adaptin_N domain-containing protein.	0.999
T1IVD0_STRMM	T1IZY9_STRMM	T1IVD0	T1IZY9	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.999
T1IVD0_STRMM	T1J3E7_STRMM	T1IVD0	T1J3E7	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Adaptin_N domain-containing protein.	0.972
T1IVD0_STRMM	T1J7Q7_STRMM	T1IVD0	T1J7Q7	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.992
T1IVD0_STRMM	T1JKH1_STRMM	T1IVD0	T1JKH1	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	DUF1681 domain-containing protein.	0.987
T1IVD0_STRMM	T1JLE5_STRMM	T1IVD0	T1JLE5	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.985
T1IVD0_STRMM	T1JMF6_STRMM	T1IVD0	T1JMF6	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	AP-1 complex subunit gamma.	0.977
T1IVD0_STRMM	T1JMU4_STRMM	T1IVD0	T1JMU4	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
T1IY47_STRMM	T1IH15_STRMM	T1IY47	T1IH15	Uncharacterized protein.	Uncharacterized protein.	0.998