T1IXG8_STRMM protein (Strigamia maritima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1IXG8_STRMM

Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (444 aa)

Predicted Functional Partners:

T1ISI1_STRMM

0.988

T1JPF9_STRMM

0.980

T1JAM6_STRMM

0.979

T1J2S4_STRMM

0.962

T1JJS1_STRMM

0.950

T1J2L6_STRMM

0.897

T1ISM5_STRMM

0.881

T1JGR5_STRMM

0.821

T1JH40_STRMM

0.821

T1JPD7_STRMM

0.813

Your Current Organism:

Strigamia maritima

NCBI taxonomy Id: 126957
Other names: S. maritima

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1ISI1_STRMM	T1ISM5_STRMM	T1ISI1	T1ISM5	Uncharacterized protein.	Uncharacterized protein.	0.991
T1ISI1_STRMM	T1IXG8_STRMM	T1ISI1	T1IXG8	Uncharacterized protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.988
T1ISI1_STRMM	T1J2L6_STRMM	T1ISI1	T1J2L6	Uncharacterized protein.	Uncharacterized protein.	0.612
T1ISI1_STRMM	T1J2S4_STRMM	T1ISI1	T1J2S4	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.612
T1ISI1_STRMM	T1JAM6_STRMM	T1ISI1	T1JAM6	Uncharacterized protein.	MACPF domain-containing protein.	0.629
T1ISI1_STRMM	T1JGR5_STRMM	T1ISI1	T1JGR5	Uncharacterized protein.	WW domain-containing protein.	0.609
T1ISI1_STRMM	T1JH40_STRMM	T1ISI1	T1JH40	Uncharacterized protein.	Uncharacterized protein.	0.881
T1ISI1_STRMM	T1JJS1_STRMM	T1ISI1	T1JJS1	Uncharacterized protein.	HMG box domain-containing protein.	0.628
T1ISI1_STRMM	T1JPD7_STRMM	T1ISI1	T1JPD7	Uncharacterized protein.	Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family.	0.993
T1ISI1_STRMM	T1JPF9_STRMM	T1ISI1	T1JPF9	Uncharacterized protein.	P66_CC domain-containing protein.	0.990
T1ISM5_STRMM	T1ISI1_STRMM	T1ISM5	T1ISI1	Uncharacterized protein.	Uncharacterized protein.	0.991
T1ISM5_STRMM	T1IXG8_STRMM	T1ISM5	T1IXG8	Uncharacterized protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.881
T1ISM5_STRMM	T1JH40_STRMM	T1ISM5	T1JH40	Uncharacterized protein.	Uncharacterized protein.	0.754
T1ISM5_STRMM	T1JPD7_STRMM	T1ISM5	T1JPD7	Uncharacterized protein.	Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family.	0.790
T1ISM5_STRMM	T1JPF9_STRMM	T1ISM5	T1JPF9	Uncharacterized protein.	P66_CC domain-containing protein.	0.999
T1IXG8_STRMM	T1ISI1_STRMM	T1IXG8	T1ISI1	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	Uncharacterized protein.	0.988
T1IXG8_STRMM	T1ISM5_STRMM	T1IXG8	T1ISM5	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	Uncharacterized protein.	0.881
T1IXG8_STRMM	T1J2L6_STRMM	T1IXG8	T1J2L6	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	Uncharacterized protein.	0.897
T1IXG8_STRMM	T1J2S4_STRMM	T1IXG8	T1J2S4	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	DNA_mis_repair domain-containing protein.	0.962
T1IXG8_STRMM	T1JAM6_STRMM	T1IXG8	T1JAM6	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	MACPF domain-containing protein.	0.979

page 1 of 4

Server load: low (26%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About