STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T1IYM1_STRMMUncharacterized protein. (350 aa)    
Predicted Functional Partners:
T1IQH2_STRMM
Transcription elongation factor SPT5.
    
 0.894
T1IWA4_STRMM
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.887
T1JDI6_STRMM
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.887
T1IUL8_STRMM
Uncharacterized protein.
    
 0.841
T1J2C1_STRMM
RPOLD domain-containing protein.
   
 0.806
T1IQR5_STRMM
Uncharacterized protein.
    
  0.764
T1IUK5_STRMM
Uncharacterized protein.
    
  0.764
T1J5W7_STRMM
RPOLD domain-containing protein.
    
 0.746
T1J3Q6_STRMM
RPOL4c domain-containing protein.
    
  0.742
T1JDR1_STRMM
RPOL4c domain-containing protein.
    
  0.742
Your Current Organism:
Strigamia maritima
NCBI taxonomy Id: 126957
Other names: S. maritima
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