T1J3E5_STRMM protein (Strigamia maritima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1J3E5_STRMM

Exonuclease domain-containing protein. (242 aa)

Predicted Functional Partners:

T1J888_STRMM

0.651

T1IYV6_STRMM

0.647

T1IV68_STRMM

0.642

T1IUW4_STRMM

0.633

T1IWF2_STRMM

0.626

T1JAX7_STRMM

0.621

T1J057_STRMM

0.617

T1JJT4_STRMM

0.610

T1J6Y0_STRMM

0.609

T1IMK2_STRMM

0.599

Your Current Organism:

Strigamia maritima

NCBI taxonomy Id: 126957
Other names: S. maritima

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1IMK2_STRMM	T1IUW4_STRMM	T1IMK2	T1IUW4	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal_L2_C domain-containing protein.	0.999
T1IMK2_STRMM	T1IV68_STRMM	T1IMK2	T1IV68	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.997
T1IMK2_STRMM	T1IWF2_STRMM	T1IMK2	T1IWF2	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal_L2_C domain-containing protein.	0.986
T1IMK2_STRMM	T1IYV6_STRMM	T1IMK2	T1IYV6	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal_L7Ae domain-containing protein.	0.997
T1IMK2_STRMM	T1J057_STRMM	T1IMK2	T1J057	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribos_L4_asso_C domain-containing protein.	0.976
T1IMK2_STRMM	T1J3E5_STRMM	T1IMK2	T1J3E5	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Exonuclease domain-containing protein.	0.599
T1IMK2_STRMM	T1J6Y0_STRMM	T1IMK2	T1J6Y0	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal_L16 domain-containing protein.	0.980
T1IMK2_STRMM	T1J888_STRMM	T1IMK2	T1J888	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.994
T1IMK2_STRMM	T1JAX7_STRMM	T1IMK2	T1JAX7	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ipi1_N domain-containing protein.	0.838
T1IMK2_STRMM	T1JJT4_STRMM	T1IMK2	T1JJT4	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.463
T1IUW4_STRMM	T1IMK2_STRMM	T1IUW4	T1IMK2	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
T1IUW4_STRMM	T1IV68_STRMM	T1IUW4	T1IV68	Ribosomal_L2_C domain-containing protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.998
T1IUW4_STRMM	T1IYV6_STRMM	T1IUW4	T1IYV6	Ribosomal_L2_C domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.997
T1IUW4_STRMM	T1J057_STRMM	T1IUW4	T1J057	Ribosomal_L2_C domain-containing protein.	Ribos_L4_asso_C domain-containing protein.	0.971
T1IUW4_STRMM	T1J3E5_STRMM	T1IUW4	T1J3E5	Ribosomal_L2_C domain-containing protein.	Exonuclease domain-containing protein.	0.633
T1IUW4_STRMM	T1J6Y0_STRMM	T1IUW4	T1J6Y0	Ribosomal_L2_C domain-containing protein.	Ribosomal_L16 domain-containing protein.	0.967
T1IUW4_STRMM	T1J888_STRMM	T1IUW4	T1J888	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.984
T1IUW4_STRMM	T1JAX7_STRMM	T1IUW4	T1JAX7	Ribosomal_L2_C domain-containing protein.	Ipi1_N domain-containing protein.	0.866
T1IUW4_STRMM	T1JJT4_STRMM	T1IUW4	T1JJT4	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.989
T1IV68_STRMM	T1IMK2_STRMM	T1IV68	T1IMK2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.997