T1JD88_STRMM protein (Strigamia maritima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1JD88_STRMM

Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (668 aa)

Predicted Functional Partners:

T1JNW1_STRMM

0.663

T1JJ38_STRMM

0.619

T1IZK6_STRMM

0.594

T1JB58_STRMM

0.532

T1IP44_STRMM

0.474

T1JBG7_STRMM

0.465

T1JBH4_STRMM

0.458

T1JKG7_STRMM

0.449

T1JNA8_STRMM

0.448

T1JBH8_STRMM

0.443

Your Current Organism:

Strigamia maritima

NCBI taxonomy Id: 126957
Other names: S. maritima

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1IP44_STRMM	T1JB58_STRMM	T1IP44	T1JB58	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.547
T1IP44_STRMM	T1JBG7_STRMM	T1IP44	T1JBG7	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.479
T1IP44_STRMM	T1JD88_STRMM	T1IP44	T1JD88	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.474
T1IP44_STRMM	T1JNA8_STRMM	T1IP44	T1JNA8	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Neur_chan_LBD domain-containing protein.	0.600
T1IZK6_STRMM	T1JB58_STRMM	T1IZK6	T1JB58	Neur_chan_LBD domain-containing protein.	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	0.421
T1IZK6_STRMM	T1JD88_STRMM	T1IZK6	T1JD88	Neur_chan_LBD domain-containing protein.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.594
T1IZK6_STRMM	T1JNA8_STRMM	T1IZK6	T1JNA8	Neur_chan_LBD domain-containing protein.	Neur_chan_LBD domain-containing protein.	0.562
T1JB58_STRMM	T1IP44_STRMM	T1JB58	T1IP44	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.547
T1JB58_STRMM	T1IZK6_STRMM	T1JB58	T1IZK6	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Neur_chan_LBD domain-containing protein.	0.421
T1JB58_STRMM	T1JD88_STRMM	T1JB58	T1JD88	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.532
T1JB58_STRMM	T1JJ38_STRMM	T1JB58	T1JJ38	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Neur_chan_LBD domain-containing protein.	0.547
T1JB58_STRMM	T1JNA8_STRMM	T1JB58	T1JNA8	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Neur_chan_LBD domain-containing protein.	0.663
T1JB58_STRMM	T1JNW1_STRMM	T1JB58	T1JNW1	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.	Neur_chan_LBD domain-containing protein.	0.421
T1JBG7_STRMM	T1IP44_STRMM	T1JBG7	T1IP44	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.479
T1JBG7_STRMM	T1JBH4_STRMM	T1JBG7	T1JBH4	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Neur_chan_LBD domain-containing protein.	0.736
T1JBG7_STRMM	T1JBH8_STRMM	T1JBG7	T1JBH8	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.749
T1JBG7_STRMM	T1JD88_STRMM	T1JBG7	T1JD88	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.465
T1JBG7_STRMM	T1JNW1_STRMM	T1JBG7	T1JNW1	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Neur_chan_LBD domain-containing protein.	0.437
T1JBH4_STRMM	T1JBG7_STRMM	T1JBH4	T1JBG7	Neur_chan_LBD domain-containing protein.	Neur_chan_LBD domain-containing protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.736
T1JBH4_STRMM	T1JD88_STRMM	T1JBH4	T1JD88	Neur_chan_LBD domain-containing protein.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.458