T1JEM9_STRMM protein (Strigamia maritima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1JEM9_STRMM

TIR domain-containing protein. (930 aa)

Predicted Functional Partners:

T1IXT1_STRMM

0.918

T1JDI4_STRMM

0.918

T1IN86_STRMM

0.737

T1IN87_STRMM

0.737

T1IN88_STRMM

0.737

T1IN89_STRMM

0.737

T1IVJ9_STRMM

0.724

T1JEN9_STRMM

0.689

T1JFK3_STRMM

0.689

T1JGT6_STRMM

0.686

Your Current Organism:

Strigamia maritima

NCBI taxonomy Id: 126957
Other names: S. maritima

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1IN86_STRMM	T1IN87_STRMM	T1IN86	T1IN87	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.992
T1IN86_STRMM	T1IN88_STRMM	T1IN86	T1IN88	Uncharacterized protein; Belongs to the MAGUK family.	Protein kinase domain-containing protein.	0.992
T1IN86_STRMM	T1IN89_STRMM	T1IN86	T1IN89	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.930
T1IN86_STRMM	T1IVJ9_STRMM	T1IN86	T1IVJ9	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.998
T1IN86_STRMM	T1JEM9_STRMM	T1IN86	T1JEM9	Uncharacterized protein; Belongs to the MAGUK family.	TIR domain-containing protein.	0.737
T1IN86_STRMM	T1JEN9_STRMM	T1IN86	T1JEN9	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.693
T1IN86_STRMM	T1JFK3_STRMM	T1IN86	T1JFK3	Uncharacterized protein; Belongs to the MAGUK family.	Ig-like domain-containing protein.	0.693
T1IN87_STRMM	T1IN86_STRMM	T1IN87	T1IN86	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.992
T1IN87_STRMM	T1IN88_STRMM	T1IN87	T1IN88	Uncharacterized protein.	Protein kinase domain-containing protein.	0.992
T1IN87_STRMM	T1IN89_STRMM	T1IN87	T1IN89	Uncharacterized protein.	Uncharacterized protein.	0.930
T1IN87_STRMM	T1IVJ9_STRMM	T1IN87	T1IVJ9	Uncharacterized protein.	Uncharacterized protein.	0.998
T1IN87_STRMM	T1JEM9_STRMM	T1IN87	T1JEM9	Uncharacterized protein.	TIR domain-containing protein.	0.737
T1IN87_STRMM	T1JEN9_STRMM	T1IN87	T1JEN9	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.693
T1IN87_STRMM	T1JFK3_STRMM	T1IN87	T1JFK3	Uncharacterized protein.	Ig-like domain-containing protein.	0.693
T1IN88_STRMM	T1IN86_STRMM	T1IN88	T1IN86	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.992
T1IN88_STRMM	T1IN87_STRMM	T1IN88	T1IN87	Protein kinase domain-containing protein.	Uncharacterized protein.	0.992
T1IN88_STRMM	T1IN89_STRMM	T1IN88	T1IN89	Protein kinase domain-containing protein.	Uncharacterized protein.	0.930
T1IN88_STRMM	T1IVJ9_STRMM	T1IN88	T1IVJ9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.998
T1IN88_STRMM	T1JEM9_STRMM	T1IN88	T1JEM9	Protein kinase domain-containing protein.	TIR domain-containing protein.	0.737
T1IN88_STRMM	T1JEN9_STRMM	T1IN88	T1JEN9	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.693