T1JKT1_STRMM protein (Strigamia maritima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1JKT1_STRMM

Uncharacterized protein. (569 aa)

Predicted Functional Partners:

T1IV49_STRMM

0.999

T1IVL1_STRMM

0.999

T1J6K6_STRMM

0.999

T1J8G6_STRMM

0.999

T1JFU7_STRMM

0.999

T1JJK0_STRMM

0.999

T1JPK8_STRMM

0.998

T1J4E6_STRMM

0.997

T1JMN9_STRMM

0.997

T1JE06_STRMM

0.991

Your Current Organism:

Strigamia maritima

NCBI taxonomy Id: 126957
Other names: S. maritima

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1IV49_STRMM	T1IVL1_STRMM	T1IV49	T1IVL1	Helicase ATP-binding domain-containing protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
T1IV49_STRMM	T1J4E6_STRMM	T1IV49	T1J4E6	Helicase ATP-binding domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.998
T1IV49_STRMM	T1J6K6_STRMM	T1IV49	T1J6K6	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.999
T1IV49_STRMM	T1J8G6_STRMM	T1IV49	T1J8G6	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.999
T1IV49_STRMM	T1JE06_STRMM	T1IV49	T1JE06	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.971
T1IV49_STRMM	T1JFU7_STRMM	T1IV49	T1JFU7	Helicase ATP-binding domain-containing protein.	RING-type domain-containing protein.	0.999
T1IV49_STRMM	T1JJK0_STRMM	T1IV49	T1JJK0	Helicase ATP-binding domain-containing protein.	General transcription factor IIH subunit.	0.999
T1IV49_STRMM	T1JKT1_STRMM	T1IV49	T1JKT1	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.999
T1IV49_STRMM	T1JMN9_STRMM	T1IV49	T1JMN9	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.985
T1IV49_STRMM	T1JPK8_STRMM	T1IV49	T1JPK8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.997
T1IVL1_STRMM	T1IV49_STRMM	T1IVL1	T1IV49	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Helicase ATP-binding domain-containing protein.	0.999
T1IVL1_STRMM	T1J4E6_STRMM	T1IVL1	T1J4E6	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein; Belongs to the cyclin family.	0.993
T1IVL1_STRMM	T1J6K6_STRMM	T1IVL1	T1J6K6	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.999
T1IVL1_STRMM	T1J8G6_STRMM	T1IVL1	T1J8G6	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.999
T1IVL1_STRMM	T1JE06_STRMM	T1IVL1	T1JE06	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.937
T1IVL1_STRMM	T1JFU7_STRMM	T1IVL1	T1JFU7	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	RING-type domain-containing protein.	0.999
T1IVL1_STRMM	T1JJK0_STRMM	T1IVL1	T1JJK0	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	General transcription factor IIH subunit.	0.999
T1IVL1_STRMM	T1JKT1_STRMM	T1IVL1	T1JKT1	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.999
T1IVL1_STRMM	T1JMN9_STRMM	T1IVL1	T1JMN9	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.806
T1IVL1_STRMM	T1JPK8_STRMM	T1IVL1	T1JPK8	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.999