STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T1JM82_STRMMUncharacterized protein. (418 aa)    
Predicted Functional Partners:
T1IPR4_STRMM
Uncharacterized protein.
  
 
 0.990
T1J0H2_STRMM
C3H1-type domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
   
 
 0.746
T1JJA9_STRMM
THUMP domain-containing protein.
   
 
 0.695
T1JK63_STRMM
THUMP domain-containing protein.
   
 
 0.695
T1JIK2_STRMM
Brix domain-containing protein.
   
    0.669
T1J9G0_STRMM
AA_TRNA_LIGASE_II domain-containing protein.
  
 
 0.623
T1J741_STRMM
PseudoU_synth_1 domain-containing protein.
  
 
 0.605
T1JKQ1_STRMM
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
   
  
 0.600
T1JH31_STRMM
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
 
 0.595
T1IWK6_STRMM
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
   
    0.572
Your Current Organism:
Strigamia maritima
NCBI taxonomy Id: 126957
Other names: S. maritima
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