STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KVA01_08890Unannotated protein; Belongs to the copper/topaquinone oxidase family. (70 aa)    
Predicted Functional Partners:
KVA01_08880
Unannotated protein.
     0.988
KVA01_08870
Unannotated protein; Belongs to the copper/topaquinone oxidase family.
     0.987
KVA01_03960
Unannotated protein.
  
 0.575
rpsI_2
Unannotated protein; Belongs to the universal ribosomal protein uS9 family.
    
   0.547
KVA01_06330
Unannotated protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
   0.547
fbaA
Unannotated protein; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
    
   0.547
rplQ
Unannotated protein.
    
   0.547
rplK
Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.547
GCA_900014985_00955
Unannotated protein.
    
   0.547
rpsF
Unannotated protein; Binds together with S18 to 16S ribosomal RNA.
    
   0.547
Your Current Organism:
Kocuria varians
NCBI taxonomy Id: 1272
Other names: ATCC 15306, CCM 884, CCUG 35392, CIP 81.73, DSM 20033, HAMBI 40, IEGM 400, IFO 15358, JCM 7238, K. varians, LMG 14231, LMG:14231, Micrococcus varians, NBRC 15358, NCDO 777, NCTC 7564
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.