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HX89_03560 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_03560" - Uncharacterized protein in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
HX89_03560Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (349 aa)    
Predicted Functional Partners:
HX89_03565
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (562 aa)
         
  0.596
HX89_02780
Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1391 aa)
           
  0.596
HX89_03555
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (384 aa)
              0.480
HX89_10965
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (194 aa)
     
      0.417
HX89_04645
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (267 aa)
     
      0.417
HX89_04390
RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (227 aa)
     
      0.417
HX89_02555
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (211 aa)
     
      0.417
HX89_00595
Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription- in Mycobacterium bovis this protein has been shown to be active at high temperatures and during stationary phase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (174 aa)
     
      0.417
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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