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HX89_05315 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_05315" - Alpha-amylase in Dermacoccus nishinomiyaensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
HX89_05315Alpha-amylase; Derived by automated computational analysis using gene prediction method- Protein Homology (578 aa)    
Predicted Functional Partners:
HX89_04980
Trehalose synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (606 aa)
 
   
0.930
HX89_06850
4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (747 aa)
   
 
  0.923
HX89_03990
Kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
 
 
  0.923
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily (1502 aa)
 
 
  0.876
HX89_05320
Globin; Derived by automated computational analysis using gene prediction method- Protein Homology (134 aa)
   
        0.689
HX89_12710
Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method- Protein Homology (186 aa)
       
  0.589
HX89_11710
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
 
   
  0.535
HX89_11715
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (529 aa)
 
     
  0.530
HX89_11940
Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (617 aa)
 
   
  0.472
HX89_07195
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (394 aa)
     
 
  0.446
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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