STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101350016TBC1 domain family member 20 isoform X1. (403 aa)    
Predicted Functional Partners:
LOC101345760
Ras-related protein Rab-1A.
    
 0.868
LOC101355212
Ras-related protein Rab-1B.
    
 0.868
LOC101352798
Ras-related protein Rab-33A.
    
 0.646
LOC101345486
Ras-related protein Rab-33B isoform X1.
    
 0.646
LOC101343911
Ras-related protein Rab-43.
    
 0.611
LOC101354194
Ras-related protein Rab-19.
    
 0.611
LOC101357241
TBC1 domain family member 5 isoform X1.
    
 
 0.611
LOC101344855
TBC1 domain family member 16.
      
 0.606
LOC101341106
Ras-related protein Rab-18 isoform X1.
      
 0.597
LOC101349773
Ras-related protein Rab-7a-like.
    
 0.593
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.