STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101355591Arrestin domain-containing protein 4. (418 aa)    
Predicted Functional Partners:
LOC101345961
E3 ubiquitin-protein ligase.
    
 
 0.678
LOC101342682
E3 ubiquitin-protein ligase NEDD4-like isoform X1.
    
 
 0.591
LOC101346291
Thioredoxin; Belongs to the thioredoxin family.
    
 0.582
LOC101348896
Thioredoxin domain-containing protein 2.
    
 0.582
LOC101347895
Thioredoxin domain-containing protein 8.
    
 0.582
LOC101351173
E3 ubiquitin-protein ligase.
    
 
 0.519
LOC101348545
Thioredoxin domain-containing protein 3.
    
 0.502
LOC101341247
Thioredoxin domain-containing protein 6 isoform X1; Belongs to the NDK family.
    
 0.476
LOC101350732
NACHT, LRR and PYD domains-containing protein 12 isoform X1.
    
 0.472
LOC101356534
ERO1-like protein beta isoform X1.
      
 0.436
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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