STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101353475Transcription factor SOX. (467 aa)    
Predicted Functional Partners:
LOC101351897
Catenin beta-1.
    
 0.499
LOC101345125
Lymphoid enhancer-binding factor 1 isoform X1.
    
0.481
LOC101350837
LOW QUALITY PROTEIN: transcription factor 7.
    
0.478
LOC101355667
Junction plakoglobin.
    
 0.457
LOC101344599
POU domain protein.
    
 0.431
LOC111820279
LOW QUALITY PROTEIN: POU domain, class 5, transcription factor 2.
    
 0.431
LOC101341696
Transcription factor 7-like 1.
    
 0.410
LOC101345532
Transcription factor 7-like 2 isoform X1.
    
0.410
LOC101355539
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
    
 
 0.403
LOC101357774
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
    
 
 0.403
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.