STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101343939Protein FAM84A. (292 aa)    
Predicted Functional Partners:
LOC101353501
Ankyrin repeat domain-containing protein 55 isoform X1.
      
 0.591
LOC101361057
Protein dopey-2.
      
 0.568
LOC101342980
Uncharacterized protein KIAA0355 homolog.
      
 0.563
LOC101357587
Protein dopey-1 isoform X1.
      
 0.563
LOC101358686
Uncharacterized protein KIAA1551 homolog isoform X1.
      
 0.551
LOC101342479
Protein FAM49A isoform X1.
      
 0.550
LOC101359153
Dapper homolog 2.
   
    0.511
LOC101354219
5'-nucleotidase domain-containing protein 2.
      
 0.475
LOC101352538
Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
      
 0.467
LOC101361681
Protein phosphatase 1 regulatory subunit 1A.
      
 0.448
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.