STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101358389Transgelin; Belongs to the calponin family. (199 aa)    
Predicted Functional Partners:
LOC101341057
WD repeat-containing protein 90.
    
 
 0.705
LOC101344393
Enkurin.
   
 
 0.566
LOC101360609
EF-hand domain-containing family member B.
   
   0.514
LOC101361463
WD repeat-containing protein 1.
   
 
 0.514
LOC101350153
Vinculin isoform X4.
   
 
 0.495
LOC105755966
Nucleoside diphosphate kinase.
    
 
 0.485
LOC101341953
Parkin coregulated gene protein.
    
 
 0.482
LOC101343244
PACRG-like protein.
    
 
 0.482
LOC101359239
EF-hand domain-containing protein 1 isoform X1.
   
 
 0.478
LOC101350969
EF-hand domain-containing family member C2.
   
 
 0.478
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.