STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101348587RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs. (505 aa)    
Predicted Functional Partners:
LOC101355936
Protein archease.
 
 0.953
LOC101343163
ATP-dependent RNA helicase DDX1.
   
 0.950
LOC101342291
Ashwin.
    
 0.917
LOC101352849
RNA transcription, translation and transport factor protein.
   
 0.909
LOC101344327
RNA 3'-terminal phosphate cyclase isoform X1.
  
  
 0.856
LOC101360824
Schlafen-like protein 1.
   
 0.833
LOC101356436
Eukaryotic translation initiation factor 2 subunit 1.
   
  
 0.749
LOC101354027
tRNA 2'-phosphotransferase 1.
     
 0.747
LOC101360311
peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X3.
  
  
 0.715
LOC101359442
RNA 3'-terminal phosphate cyclase-like protein isoform X1.
  
  
 0.711
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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