STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101351481PHD finger-like domain-containing protein 5A. (110 aa)    
Predicted Functional Partners:
LOC101348008
Splicing factor 3B subunit 6.
   
 0.999
LOC101341613
Splicing factor 3B subunit 3 isoform X1.
   
 0.999
LOC101356433
Splicing factor 3B subunit 4.
    
 0.999
LOC101359673
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.999
LOC101357717
Splicing factor 3B subunit 1 isoform X1.
   
 0.999
LOC101356060
Splicing factor 3B subunit 2.
    
 0.999
LOC101359765
Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.
   
 0.995
LOC101349631
Splicing factor 3A subunit 2.
    
 0.993
LOC101348122
Probable ATP-dependent RNA helicase DDX46 isoform X1.
   
 0.993
LOC101351575
U2 small nuclear ribonucleoprotein A.
   
 0.992
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.