STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101342583Host cell factor 2 isoform X1. (793 aa)    
Predicted Functional Partners:
LOC101341664
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1.
   
 0.925
LOC101342908
Host cell factor 1.
     
 
0.900
LOC101352931
Ubiquitin carboxyl-terminal hydrolase.
    
 0.849
LOC101351493
Tetratricopeptide repeat protein 6.
   
 0.832
LOC101356080
Microspherule protein 1 isoform X1.
    
 0.780
LOC101343587
WD repeat-containing protein 5B.
   
 0.727
LOC101343291
WD repeat-containing protein 5.
   
 0.727
LOC101348029
set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 
 0.727
LOC101348653
PHD finger protein 20 isoform X1.
    
 0.725
LOC101341081
WD repeat and SOCS box-containing protein 2 isoform X1.
   
 0.699
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.