STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101346386DNA-binding protein RFX7. (1457 aa)    
Predicted Functional Partners:
LOC101357405
DNA-binding protein RFXANK.
    
 
 0.871
LOC101340898
Ankyrin repeat family A protein 2 isoform X1.
    
 
 0.844
LOC101349821
DNA-binding protein RFX6.
    
 
0.637
LOC101358275
DNA-binding protein RFX8.
    
 
 0.634
LOC101345869
Transcription factor RFX4 isoform X1.
    
 
0.597
LOC101341680
Serine/threonine-protein kinase ATR isoform X1; Belongs to the PI3/PI4-kinase family.
    
 
 0.553
LOC101343924
DNA-binding protein RFX5 isoform X1.
    
 
0.531
LOC101355410
Tetratricopeptide repeat protein 25.
    
 
 0.486
LOC101350565
DNA-binding protein RFX2.
    
 
0.486
LOC101358792
DNA-binding protein RFX2-like.
    
 
0.486
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.