STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101354577E3 ubiquitin/ISG15 ligase TRIM25-like. (600 aa)    
Predicted Functional Partners:
LOC101340796
Probable ATP-dependent RNA helicase DDX58.
   
 0.702
LOC101359159
ubiquitin/ISG15-conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.587
LOC101341398
Interferon-induced helicase C domain-containing protein 1 isoform X1.
   
 0.586
LOC101361983
ubiquitin-40S ribosomal protein S27a.
    
  0.561
LOC101348454
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.523
LOC111819196
Ubiquitin-conjugating enzyme E2 N-like.
   
 0.523
LOC101343892
Ubiquitin-like protein ISG15.
   
 0.482
LOC101361963
ubiquitin-60S ribosomal protein L40.
    
  0.442
LOC111822114
polyubiquitin-C.
    
  0.442
LOC101350526
Coiled-coil domain-containing protein 170-like.
  
 
  0.440
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.