STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101345878cyclin-T2 isoform X1; Belongs to the cyclin family. (733 aa)    
Predicted Functional Partners:
LOC101347668
Cyclin-dependent kinase 9 isoform X1; Belongs to the protein kinase superfamily.
   
 0.997
LOC101348723
cyclin-T1; Belongs to the cyclin family.
    
0.957
LOC101352816
AF4/FMR2 family member 4 isoform X1.
   
 0.910
LOC101353116
AF4/FMR2 family member 1 isoform X3.
   
 0.856
LOC101353238
Cyclin-dependent kinase 12 isoform X1.
   
 0.851
LOC101354360
Cyclin-dependent kinase 13 isoform X1.
   
 0.800
LOC101355296
La-related protein 7 isoform X1.
   
 0.772
LOC101341755
RNA polymerase II elongation factor ELL3.
    
 0.755
LOC101356422
Transcription elongation factor SPT5.
   
 0.755
LOC101345787
cyclin-H.
     
 0.735
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.