LOC101346480 protein (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101346480

Rab3 GTPase-activating protein non-catalytic subunit isoform X1. (1392 aa)

Predicted Functional Partners:

LOC101346730

0.998

LOC101341106

0.875

LOC101351365

0.667

LOC101357891

0.645

LOC101345773

0.645

LOC101356826

0.636

LOC101355681

0.625

LOC101359363

0.605

LOC101341411

0.594

LOC101350385

0.594

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101341106	LOC101341411	A0A2Y9E3D5	A0A2Y9DQR0	Ras-related protein Rab-18 isoform X1.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.645
LOC101341106	LOC101345773	A0A2Y9E3D5	A0A2Y9EB31	Ras-related protein Rab-18 isoform X1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.717
LOC101341106	LOC101346480	A0A2Y9E3D5	A0A2Y9DJP6	Ras-related protein Rab-18 isoform X1.	Rab3 GTPase-activating protein non-catalytic subunit isoform X1.	0.875
LOC101341106	LOC101346730	A0A2Y9E3D5	A0A2Y9DI64	Ras-related protein Rab-18 isoform X1.	Rab3 GTPase-activating protein catalytic subunit isoform X1.	0.878
LOC101341106	LOC101350385	A0A2Y9E3D5	A0A2Y9R4Y6	Ras-related protein Rab-18 isoform X1.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.645
LOC101341106	LOC101356826	A0A2Y9E3D5	A0A2Y9RKD2	Ras-related protein Rab-18 isoform X1.	Dynactin subunit 4 isoform X1.	0.625
LOC101341106	LOC101357891	A0A2Y9E3D5	A0A2Y9DRH1	Ras-related protein Rab-18 isoform X1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.717
LOC101341411	LOC101341106	A0A2Y9DQR0	A0A2Y9E3D5	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Ras-related protein Rab-18 isoform X1.	0.645
LOC101341411	LOC101345773	A0A2Y9DQR0	A0A2Y9EB31	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.467
LOC101341411	LOC101346480	A0A2Y9DQR0	A0A2Y9DJP6	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Rab3 GTPase-activating protein non-catalytic subunit isoform X1.	0.594
LOC101341411	LOC101346730	A0A2Y9DQR0	A0A2Y9DI64	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Rab3 GTPase-activating protein catalytic subunit isoform X1.	0.599
LOC101341411	LOC101357891	A0A2Y9DQR0	A0A2Y9DRH1	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.467
LOC101345773	LOC101341106	A0A2Y9EB31	A0A2Y9E3D5	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-18 isoform X1.	0.717
LOC101345773	LOC101341411	A0A2Y9EB31	A0A2Y9DQR0	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.467
LOC101345773	LOC101346480	A0A2Y9EB31	A0A2Y9DJP6	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab3 GTPase-activating protein non-catalytic subunit isoform X1.	0.645
LOC101345773	LOC101346730	A0A2Y9EB31	A0A2Y9DI64	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab3 GTPase-activating protein catalytic subunit isoform X1.	0.551
LOC101345773	LOC101350385	A0A2Y9EB31	A0A2Y9R4Y6	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.467
LOC101346480	LOC101341106	A0A2Y9DJP6	A0A2Y9E3D5	Rab3 GTPase-activating protein non-catalytic subunit isoform X1.	Ras-related protein Rab-18 isoform X1.	0.875
LOC101346480	LOC101341411	A0A2Y9DJP6	A0A2Y9DQR0	Rab3 GTPase-activating protein non-catalytic subunit isoform X1.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.594
LOC101346480	LOC101345773	A0A2Y9DJP6	A0A2Y9EB31	Rab3 GTPase-activating protein non-catalytic subunit isoform X1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.645