STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101342590Homeobox protein Hox-B3. (432 aa)    
Predicted Functional Partners:
LOC101342330
Homeobox protein Hox-B4.
   
  
0.818
LOC101342087
Homeobox protein Hox-B5.
   
  
0.696
LOC101341835
Homeobox protein Hox-B6.
   
  
0.653
LOC101341329
Homeobox protein Hox-B8.
   
  
0.539
LOC101355181
Nuclear receptor subfamily 4 group A member 2 isoform X1.
    
 
 0.521
LOC101351120
Serine/threonine-protein kinase VRK2.
    
 
 0.521
LOC101341190
Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.
    
 
 0.468
LOC101342840
Homeobox protein Hox-B2.
   
  
0.453
LOC101341076
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
 
0.414
LOC101342080
pre-B-cell leukemia transcription factor 3 isoform X2.
    
 0.403
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.