LOC101341077 protein (Trichechus manatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101341077

BTB/POZ domain-containing protein KCTD18 isoform X1. (418 aa)

Predicted Functional Partners:

LOC101361692

0.501

LOC101354915

0.436

LOC101361439

0.434

LOC101357018

0.433

LOC101358967

0.402

Your Current Organism:

Trichechus manatus

NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101341077	LOC101354915	A0A2Y9DPN1	A0A2Y9DET4	BTB/POZ domain-containing protein KCTD18 isoform X1.	Protein FAM135B.	0.436
LOC101341077	LOC101357018	A0A2Y9DPN1	A0A2Y9DB14	BTB/POZ domain-containing protein KCTD18 isoform X1.	Calcium-activated potassium channel subunit beta-1.	0.433
LOC101341077	LOC101358967	A0A2Y9DPN1	A0A2Y9D6D6	BTB/POZ domain-containing protein KCTD18 isoform X1.	Acylamino-acid-releasing enzyme isoform X1.	0.402
LOC101341077	LOC101361439	A0A2Y9DPN1	A0A2Y9DPI3	BTB/POZ domain-containing protein KCTD18 isoform X1.	UPF0565 protein C2orf69 homolog.	0.434
LOC101341077	LOC101361692	A0A2Y9DPN1	A0A2Y9RA40	BTB/POZ domain-containing protein KCTD18 isoform X1.	tRNA wybutosine-synthesizing protein 5 isoform X1.	0.501
LOC101354915	LOC101341077	A0A2Y9DET4	A0A2Y9DPN1	Protein FAM135B.	BTB/POZ domain-containing protein KCTD18 isoform X1.	0.436
LOC101357018	LOC101341077	A0A2Y9DB14	A0A2Y9DPN1	Calcium-activated potassium channel subunit beta-1.	BTB/POZ domain-containing protein KCTD18 isoform X1.	0.433
LOC101358967	LOC101341077	A0A2Y9D6D6	A0A2Y9DPN1	Acylamino-acid-releasing enzyme isoform X1.	BTB/POZ domain-containing protein KCTD18 isoform X1.	0.402
LOC101361439	LOC101341077	A0A2Y9DPI3	A0A2Y9DPN1	UPF0565 protein C2orf69 homolog.	BTB/POZ domain-containing protein KCTD18 isoform X1.	0.434
LOC101361692	LOC101341077	A0A2Y9RA40	A0A2Y9DPN1	tRNA wybutosine-synthesizing protein 5 isoform X1.	BTB/POZ domain-containing protein KCTD18 isoform X1.	0.501