STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101351867Potassium voltage-gated channel subfamily D member 3 isoform X1; Belongs to the potassium channel family. (655 aa)    
Predicted Functional Partners:
LOC101342696
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.878
LOC101356438
Kv channel-interacting protein 1 isoform X1.
    
 0.772
LOC101357242
60S ribosomal protein L23a isoform X1; Belongs to the universal ribosomal protein uL23 family.
   
 0.698
LOC101359180
60S ribosomal protein L35a.
   
 0.695
LOC101361769
60S ribosomal protein L35.
   
 0.695
LOC101350352
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.694
LOC101358702
60S ribosomal protein L32.
   
 0.689
LOC101351592
60S ribosomal protein L24.
   
 0.689
LOC101346959
Calsenilin isoform X1.
    
 0.674
LOC101351767
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.670
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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