STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101340838Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (462 aa)    
Predicted Functional Partners:
LOC101345053
Elongation factor 1-gamma.
   
 0.995
LOC101360274
Heat shock factor protein 1.
   
 
 0.944
LOC101345055
GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 
 0.937
LOC101354731
Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 isoform X1.
 
    
 0.905
LOC101358096
Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.
     
 0.901
LOC101355011
Elongation factor 1-beta; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.890
LOC101343965
Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 isoform X1.
 
    
 0.872
LOC101356860
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 0.855
LOC101348406
valine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.822
LOC101343859
60S ribosomal protein L4.
   
 0.802
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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