STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101357902Collagen alpha-1(XIX) chain. (1139 aa)    
Predicted Functional Partners:
LOC101361373
Serpin H1; Belongs to the serpin family.
   
 0.480
LOC101356602
Protein cornichon homolog 1.
   
 
 0.471
LOC101344305
Cell adhesion molecule-related/down-regulated by oncogenes.
    
 0.471
LOC101361896
Von Willebrand factor A domain-containing protein 1.
   
  
 0.467
LOC101347174
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1.
   
 0.449
LOC101349481
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.449
LOC101358670
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.449
LOC101347178
NUT family member 1.
    
 0.438
LOC101351766
Zinc finger HIT domain-containing protein 3.
      
 0.436
LOC101354536
LOW QUALITY PROTEIN: PR domain zinc finger protein 15.
    
 0.402
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.