STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101342181H/ACA ribonucleoprotein complex non-core subunit NAF1. (481 aa)    
Predicted Functional Partners:
LOC101361927
H/ACA ribonucleoprotein complex subunit 4.
   
 
 0.988
LOC101360294
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.949
LOC101359378
H/ACA ribonucleoprotein complex subunit 3.
   
 
 0.946
LOC101348847
Probable tRNA pseudouridine synthase 1 isoform X1.
   
 
 0.877
LOC101349433
Protein SHQ1 homolog isoform X1.
   
 
 0.800
LOC101342746
LOW QUALITY PROTEIN: mitochondrial mRNA pseudouridine synthase TRUB2.
   
 
 0.791
LOC101348269
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.762
LOC101360589
Ribonuclease P protein subunit p38.
   
 0.712
LOC101357619
Ribosomal L1 domain-containing protein 1.
   
  
 0.687
LOC101361991
ADP-ribosylation factor-related protein 1 isoform X1.
      
 0.669
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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