STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101360341Transcription factor SOX-7. (387 aa)    
Predicted Functional Partners:
LOC101358099
Transcription factor GATA-6.
   
 0.678
LOC101351897
Catenin beta-1.
    
 0.641
LOC101344599
POU domain protein.
    
 0.533
LOC111820279
LOW QUALITY PROTEIN: POU domain, class 5, transcription factor 2.
    
 0.533
LOC101345125
Lymphoid enhancer-binding factor 1 isoform X1.
    
0.517
LOC101345728
LOW QUALITY PROTEIN: retinitis pigmentosa 1-like 1 protein.
    
 
 0.511
LOC101359644
Mitochondrial peptide methionine sulfoxide reductase isoform X1.
      
 0.511
LOC101355667
Junction plakoglobin.
    
 0.510
LOC101340315
Transcription factor GATA-4 isoform X1.
   
 0.510
LOC101354243
Transcription factor SOX-17.
  
 
0.493
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.