STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101345561Ferredoxin-fold anticodon-binding domain-containing protein 1. (625 aa)    
Predicted Functional Partners:
LOC101356379
phenylalanine--tRNA ligase beta subunit.
  
 0.935
LOC101358519
Leucine-rich repeat-containing protein 47.
  
 0.935
LOC101350889
Adipocyte plasma membrane-associated protein isoform X1.
  
  
 0.909
LOC101351905
LOW QUALITY PROTEIN: polyribonucleotide nucleotidyltransferase 1, mitochondrial.
  
  
 0.909
LOC101354739
Tyrosine--tRNA ligase.
  
 
 0.878
LOC101345135
Mannosyltransferase.
 
      0.843
LOC101356120
LOW QUALITY PROTEIN: bifunctional glutamate/proline--tRNA ligase.
  
  
 0.837
LOC101347473
Ribosomal RNA-processing protein 8; Essential component of the eNoSC (energy-dependent nucleolar silencing) complex, a complex that mediates silencing of rDNA in response to intracellular energy status and acts by recruiting histone- modifying enzymes. The eNoSC complex is able to sense the energy status of cell: upon glucose starvation, elevation of NAD(+)/NADP(+) ratio activates SIRT1, leading to histone H3 deacetylation followed by dimethylation of H3 at 'Lys-9' (H3K9me2) by SUV39H1 and the formation of silent chromatin in the rDNA locus. In the complex, RRP8 binds to H3K9me2 and pr [...]
   
  
 0.768
LOC101348406
valine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.703
LOC101353721
Tyrosine--tRNA ligase.
  
  
 0.702
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.