STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101348281Transcription intermediary factor 1-alpha isoform X1. (1048 aa)    
Predicted Functional Partners:
LOC101340469
E3 ubiquitin-protein ligase TRIM33.
    
 
0.729
LOC101351018
Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.
    
 0.716
LOC101361643
Transcription intermediary factor 1-beta.
    
 
0.713
LOC101358763
Mothers against decapentaplegic homolog.
   
 0.652
LOC101346779
annotation not available
   
 
 0.619
LOC101351588
ATP-dependent RNA helicase TDRD9.
    
 0.617
LOC101349341
Histone-lysine N-methyltransferase SETDB1.
   
 0.611
LOC101344857
Mothers against decapentaplegic homolog.
   
 0.578
LOC101348656
Mothers against decapentaplegic homolog.
   
 0.578
LOC101349658
Zinc finger protein 10.
   
 0.547
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.