STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101344560Coiled-coil domain-containing protein 39. (943 aa)    
Predicted Functional Partners:
LOC101344621
Coiled-coil domain-containing protein 40.
    
 
 0.733
LOC101350921
Coiled-coil domain-containing protein 65.
   
 
 0.681
LOC101361243
LOW QUALITY PROTEIN: axonemal dynein light intermediate polypeptide 1.
    
 
 0.656
LOC101341685
Armadillo repeat-containing protein 4.
   
 
 0.642
LOC101349946
Glutamine-rich protein 2.
   
 0.634
LOC101361732
Cilia- and flagella-associated protein 43.
      
 0.628
LOC101361589
Protein tilB homolog.
   
 0.624
LOC101341412
Radial spoke head protein 9 homolog.
    
 
 0.610
LOC101358135
Dynein intermediate chain 2, axonemal.
   
 
 0.603
LOC101361028
Dynein assembly factor 3, axonemal.
    
 
 0.603
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.