STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101357314PR domain zinc finger protein 8. (591 aa)    
Predicted Functional Partners:
LOC101359876
LOW QUALITY PROTEIN: class E basic helix-loop-helix protein 22.
   
  
 0.620
LOC101344465
Visual system homeobox 1.
   
  
 0.544
LOC101347614
Anthrax toxin receptor; Belongs to the ATR family.
   
 
 0.530
LOC101356695
Transcription factor-like 5 protein.
      
 0.489
LOC101347684
TSC22 domain family protein 3 isoform X1.
      
 0.489
LOC101361328
Transmembrane protein 215.
      
 0.482
LOC101340498
IQ and ubiquitin-like domain-containing protein.
      
 0.470
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.