STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101356986Activator of basal transcription 1. (266 aa)    
Predicted Functional Partners:
LOC101359292
Ribosomal RNA processing protein 36 homolog.
   
 
 0.985
LOC101347450
Probable ATP-dependent RNA helicase DDX49 isoform X1; Belongs to the DEAD box helicase family.
   
 
 0.976
LOC101341652
ESF1 homolog isoform X1.
   
 
 0.974
LOC101341252
RNA helicase.
   
 
 0.973
LOC101360484
Digestive organ expansion factor homolog isoform X1.
   
 
 0.970
LOC101351422
Bystin.
   
 
 0.966
LOC101342529
U3 small nucleolar RNA-associated protein 6 homolog.
   
 
 0.960
LOC101345741
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.958
LOC101346159
Nucleolar protein 14.
   
 
 0.951
LOC101362020
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 
 0.950
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.