STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101361208TATA-binding protein-associated factor 2N. (599 aa)    
Predicted Functional Partners:
LOC101342618
TAR DNA-binding protein 43.
   
 0.777
LOC101341169
Heterogeneous nuclear ribonucleoprotein K isoform X1.
   
 0.727
LOC101352367
Heterogeneous nuclear ribonucleoproteins A2/B1.
   
0.715
LOC101357086
Heterogeneous nuclear ribonucleoprotein L isoform X2.
   
 0.703
LOC101352952
Heterogeneous nuclear ribonucleoproteins C1/C2 isoform X1.
   
 0.696
LOC101350508
Transcription initiation factor TFIID subunit 13.
   
 0.684
LOC101358985
Transcription initiation factor TFIID subunit 4.
   
 0.682
LOC101342250
Serine/arginine-rich splicing factor 1 isoform X1.
   
 0.680
LOC101358281
Transcription initiation factor TFIID subunit 5.
    
 0.660
LOC101341748
Serine/arginine-rich splicing factor 3.
   
 0.658
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.