STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101349838Desmocollin-2 isoform X1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. (913 aa)    
Predicted Functional Partners:
LOC101351801
Desmoglein-2.
   
0.955
LOC101355667
Junction plakoglobin.
   
 0.734
LOC101353217
Plakophilin-2 isoform X1.
   
 0.720
LOC101349153
Desmoglein-1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
   
0.619
LOC101351897
Catenin beta-1.
   
 0.606
LOC101345879
Plakophilin-1.
   
 0.586
LOC101354982
Desmoplakin isoform X1.
  
 0.575
LOC101352059
LOW QUALITY PROTEIN: desmoglein-3.
   
0.573
LOC101342139
Plakophilin-3.
   
 0.565
LOC101343640
Catenin alpha-3.
    
 0.506
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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