STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101359159ubiquitin/ISG15-conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)    
Predicted Functional Partners:
LOC101361983
ubiquitin-40S ribosomal protein S27a.
   
 0.990
LOC105755977
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
   
 0.990
LOC101340669
RBR-type E3 ubiquitin transferase.
    
 0.989
LOC101361963
ubiquitin-60S ribosomal protein L40.
   
 0.978
LOC111822114
polyubiquitin-C.
   
 0.978
LOC101353304
RBR-type E3 ubiquitin transferase.
   
 0.953
LOC111822315
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
  
0.938
LOC101343892
Ubiquitin-like protein ISG15.
   
 0.913
LOC101350830
RBR-type E3 ubiquitin transferase.
   
 0.865
LOC101346218
Ubiquitin-conjugating enzyme E2 variant 2 isoform X1.
   
 0.803
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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