STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101348485Collagen alpha-2(XI) chain isoform X1. (1650 aa)    
Predicted Functional Partners:
LOC101354865
Collagen alpha-2(V) chain.
  
0.651
LOC101343281
Collagen alpha-1(II) chain.
  
0.490
LOC101354262
Collagen alpha-1(I) chain.
  
0.470
LOC101341020
Collagen alpha-2(I) chain isoform X2.
  
0.470
LOC101353381
A disintegrin and metalloproteinase with thrombospondin motifs 17.
   
 0.432
LOC101340752
Procollagen C-endopeptidase enhancer 2.
   
 0.430
LOC101341513
Collagen alpha-2(VI) chain.
   
0.425
LOC101359491
Collagen alpha-1(III) chain.
  
 
0.419
LOC101361399
Histone H2A deubiquitinase MYSM1 isoform X1.
    
 0.407
LOC101361373
Serpin H1; Belongs to the serpin family.
   
 0.407
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.