STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101345180Ubiquitin recognition factor in ER-associated degradation protein 1 isoform X1. (322 aa)    
Predicted Functional Partners:
LOC101356716
UBX domain-containing protein 7.
   
 0.999
LOC101343590
Nuclear protein localization protein 4 homolog.
   
 0.999
LOC101356451
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 0.995
LOC101349843
Phospholipase A-2-activating protein isoform X1.
   
 
 0.972
LOC101341571
Ubiquitin thioesterase OTU1.
   
 
 0.971
LOC101344363
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 
 0.967
LOC101341637
FAS-associated factor 1 isoform X1.
    
 
 0.965
LOC101343857
Fanconi anemia core complex-associated protein 100.
   
 0.961
LOC101355113
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.959
LOC101346629
FAS-associated factor 2.
    
 
 0.954
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.