STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101349771Keratin, type I cuticular Ha5; Belongs to the intermediate filament family. (455 aa)    
Predicted Functional Partners:
LOC101343431
Protein unc-79 homolog isoform X1.
   
 0.692
LOC101348645
Keratin, type II cuticular Hb5 isoform X1; Belongs to the intermediate filament family.
  
0.635
LOC105756360
Keratin-associated protein 3-1.
   
 
 0.633
LOC101344301
Keratin, type I cytoskeletal 27; Belongs to the intermediate filament family.
  
0.626
LOC101346382
Homeobox protein Hox-C13.
   
  
 0.511
LOC101354044
ranBP2-like and GRIP domain-containing protein 4 isoform X1.
   
 0.502
LOC101356699
Keratin, type I cuticular Ha2; Belongs to the intermediate filament family.
  
 
0.499
LOC101355946
Keratin, type II cytoskeletal 8; Belongs to the intermediate filament family.
  
0.474
LOC101351058
Lysine-specific demethylase 6B.
   
 0.459
LOC101358668
Lysine-specific demethylase 6A isoform X1.
   
 0.454
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.