STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101354642Pulmonary surfactant-associated protein A-like isoform X1. (248 aa)    
Predicted Functional Partners:
LOC101358681
Pulmonary surfactant-associated protein C isoform X1.
   
 
 0.915
LOC101344506
Pulmonary surfactant-associated protein B.
   
 
 0.882
LOC101354142
Pulmonary surfactant-associated protein D.
  
0.837
LOC101354153
Advanced glycosylation end product-specific receptor isoform X1.
   
 
 0.691
LOC101354207
Secretoglobin family 3A member 2.
   
  
 0.689
LOC101354394
Mannose-binding protein A-like.
  
0.655
LOC101350082
Uteroglobin.
   
  
 0.648
LOC101361081
Cytoskeleton-associated protein 4.
    
 0.627
LOC101356055
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
  
 0.409
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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