STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101342981Cadherin-18-like; Cadherins are calcium-dependent cell adhesion proteins. (631 aa)    
Predicted Functional Partners:
LOC101351897
Catenin beta-1.
    
 0.620
LOC101355667
Junction plakoglobin.
    
 0.590
LOC101346780
SH3 domain-binding protein 5-like.
      
 0.549
LOC101346804
Armadillo repeat protein deleted in velo-cardio-facial syndrome.
   
 0.549
LOC101341448
Catenin delta-1 isoform X1.
   
 0.549
LOC101361328
Transmembrane protein 215.
   
  
 0.514
LOC111819630
Cadherin-11-like.
 
 
 
 0.508
LOC101342766
Catenin delta-2 isoform X1.
   
 0.473
LOC101357709
Plakophilin-4.
   
 0.473
LOC101360606
Cadherin-9 isoform X1; Cadherins are calcium-dependent cell adhesion proteins.
  
0.470
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.