STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101359697Double-stranded RNA-binding protein Staufen homolog 2 isoform X1. (608 aa)    
Predicted Functional Partners:
LOC101346225
Endoribonuclease Dicer isoform X3; Belongs to the helicase family. Dicer subfamily.
    
 0.861
LOC101341267
Ribonuclease 3.
    
 0.758
LOC101342568
Pumilio homolog 1 isoform X1.
   
 
 0.735
LOC101346859
Pumilio homolog 2 isoform X1.
   
 
 0.734
LOC101341445
Ubiquitin-conjugating enzyme E2 variant 3 isoform X1.
   
 
 0.726
LOC101358398
39S ribosomal protein L44, mitochondrial.
    
 0.717
LOC101361458
Regulator of nonsense transcripts 1 isoform X1.
    
 
 0.692
LOC111821227
Afadin- and alpha-actinin-binding protein-like isoform X1.
    
 
 0.650
LOC101344199
Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs.
    
 0.606
LOC101345519
Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs.
    
 0.606
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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