STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101358477AT-rich interactive domain-containing protein 3B isoform X2. (558 aa)    
Predicted Functional Partners:
LOC101347788
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
    
 
 0.558
LOC101349163
AT-rich interactive domain-containing protein 5A isoform X1.
      
0.546
LOC101361399
Histone H2A deubiquitinase MYSM1 isoform X1.
   
 
 0.484
LOC101350528
Histone deacetylase complex subunit SAP30L.
    
 0.481
LOC101361985
LOW QUALITY PROTEIN: histone deacetylase complex subunit SAP30.
    
 0.481
LOC101357594
E3 ubiquitin-protein ligase SHPRH isoform X1.
   
 0.469
LOC101340670
Histone deacetylase complex subunit SAP18.
     
 0.459
LOC111819674
Protein polybromo-1-like.
   
 
 0.459
LOC101348982
Protein polybromo-1 isoform X1.
   
 
 0.459
LOC101341886
Putative homeodomain transcription factor 2.
   
 
 0.457
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.