STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101354308Rho GTPase-activating protein 40. (710 aa)    
Predicted Functional Partners:
LOC101361059
Vesicular inhibitory amino acid transporter.
      
 0.719
LOC101353284
Protein-tyrosine-phosphatase.
   
  
 0.570
LOC101360377
Probable ATP-dependent RNA helicase DHX35 isoform X1.
   
  
 0.556
LOC101354668
Tensin-2 isoform X1.
    
 
 0.415
LOC111819020
Tensin-3-like.
    
 
 0.415
LOC101345078
Tensin-3.
    
 
 0.415
LOC101341995
Tensin-1 isoform X1.
    
 
 0.415
LOC101361873
CD2-associated protein isoform X1.
   
 
 0.410
LOC101361600
Rho-related BTB domain-containing protein 3.
   
 0.407
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.