STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101356519E3 ubiquitin-protein ligase. (861 aa)    
Predicted Functional Partners:
LOC101343780
CASP8 and FADD-like apoptosis regulator isoform X1; Belongs to the peptidase C14A family.
    
 0.962
LOC101351734
Mitogen-activated protein kinase.
    
 0.913
LOC101343546
Mitogen-activated protein kinase.
    
 0.913
LOC101361983
ubiquitin-40S ribosomal protein S27a.
    
 0.903
LOC111822315
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.853
LOC101351247
Thioredoxin-interacting protein.
    
 
 0.852
LOC101347819
Protein numb homolog isoform X1.
    
 0.849
LOC101341141
RING finger protein 11.
    
 0.846
LOC101356822
Receptor protein-tyrosine kinase.
    
 0.813
LOC101353540
Numb-like protein isoform X1.
    
 0.787
Your Current Organism:
Trichechus manatus
NCBI taxonomy Id: 127582
Other names: Florida manatee, T. manatus latirostris, Trichechus manatus latirostris
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